Latest Vocabulary Release Notes

License

© 2009-2014 Reagan-Udall Foundation for the FDA (RUF).

Licensed under the Apache License, Version 2.0 (the "License"); you may not use this document except in compliance with the License. You may obtain a copy of the License at http://imeds.reaganudall.org/publiclicense

Unless required by applicable law or agreed to in writing, documentation and software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. Any redistributions of this work or any derivative work or modification based on this work should be accompanied by the following source attribution: "This work is based on work by the Innovation in Medical Evidence Development and Surveillance (IMEDS) and used under license from the RUF at http://imeds.reaganudall.org/publiclicense".

Any scientific publication that is based on this work should include a reference to http://imeds.reaganudall.org


Release

This document reflects all the changes to the Vocabulary introduced since the Version 4.4 of 2014-01- 05. In addition to executing standard updates (see Appendix for latest content), the following changes were made:

 

List of changes

1.     Renamed OMOP vocabularies references to IMEDS.

2.     Concept "Randomized Drug" added to vocabulary "Drug Exposure Type" (36).

3.     Concepts "Primary Condition", "First Position Condition","Secondary Condition" added to vocabulary "IMEDS Condition Occurrence Type" (37)

4.     Concepts "Primary Procedure" and "Secondary Procedure" added to vocabulary "Procedure Occurrence Type" (38).

5.     Concepts "HRA Observation Numeric Result" and "HRA Observation Text" added to vocabulary "Observation Type" (39).

6.     Mapping_type changed from 'DRUG' to 'PROCEDURE DRUG' for mappings from ICD9-Proc to RxNorm vocabulary.


List of bug fixes

1.     Caret return symbols removed from concept.concept_name and source_to_concept_map.source_code_description fiedls

2.     Concepts with duplicated concept_code values depreciated in UCUM vocabulary.

3.     Concepts with concept_class 'SNOMED UK' removed from SNOMED vocabulary.

 

Appendix: Source Vocabulary Versions and Sources

The following table contains the location for all external source vocabularies used for the IMEDS Standard Vocabularies

Voca-bulary ID

Vocabulary Name

Source

Date used for Vocabulary

1

SNOMED-CT

UMLS distribution, http://www.nlm.nih.gov/research/umls/licensedcontent/umlsknowledgesources.html

31-Jan-2014

2

ICD-9-CM

Diagnosis and Procedure Codes: Abbreviated and Full Code Titles, Version 31, http://www.cms.gov/Medicare/Coding/ICD9ProviderDiagnosticCodes/codes.html

1-Oct-2013

3

ICD-9-Procedure

4

CPT-4

UMLS distribution, http://www.nlm.nih.gov/research/umls/licensedcontent/umlsknowledgesources.html

31-Jan-2014 

5

HCPCS

UMLS distribution, http://www.nlm.nih.gov/research/umls/licensedcontent/umlsknowledgesources.html

01-Jan-2014

 

6

LOINC

LOINC distribution, http://loinc.org/downloads/loinc

26-Dec-2013

7

NDF-RT

RxNorm distribution, http://www.nlm.nih.gov/research/umls/rxnorm/docs/rxnormfiles.html

03-Mar-2014

8

RxNorm

RxNorm distribution, http://www.nlm.nih.gov/research/umls/rxnorm/docs/rxnormfiles.html

03-Mar-2014

9

NDC

RxNorm distribution, http://www.nlm.nih.gov/research/umls/rxnorm/docs/rxnormfiles.html

03-Mar-2014

FDB distribution package

20-Jun-2013

FDA NDC distribution, http://www.fda.gov/downloads/Drugs/DevelopmentApprovalProcess/UCM070838.zip

19-Mar-2014

 

10

GPI

Medi-Span distribution package

4-Nov-2013

11

UCUM

The Unified Code for Units of Measure, Version 1.8.2, http://aurora.regenstrief.org/~ucum/ucum.html#section-Alphabetic-Index

3-Jan-2014

12

HL7 Administrative Sex

HL7, Appendix A: Data Definition Tables, http://www.hl7.org/special/committees/vocab/v26_appendix_a.pdf

27-Nov-2007

13

CDC Race

http://www.cdc.gov/nchs/data/dvs/Race_Ethnicity_CodeSet.pdf

27-Jun-2000

14

CMS Place of Service

Place of Service Codes for Professional Claims Database, http://www.cms.gov/Medicare/Medicare-Fee-for-Service-Payment/PhysicianFeeSched/downloads//Website_POS_database.pdf

1-Nov-2009

15

MedDRA

MedDRA Version 16.1, http://www.meddramsso.com/subscriber_download.asp

13-Jun-2013

16

Multum

RxNorm distribution, http://www.nlm.nih.gov/research/umls/rxnorm/docs/rxnormfiles.html

2-Dec-2013

17

Read

UMLS distribution, http://www.nlm.nih.gov/research/umls/licensedcontent/umlsknowledgesources.html

3-Jan-2014

18

OXMIS

Codes extracted from GPRD database, courtesy of GSK

1-Mar-2009

19

FDB Indication

FDB US distribution package

20-Jun-2013

20

FDB ETC

FDB US distribution package

20-Jun-2013

21

WHO ATC

FDB US distribution package

20-Jun-2013

22

Multilex

FDB UK distribution package

5-Jun-2013

28

VA Product

RxNorm distribution, http://www.nlm.nih.gov/research/umls/rxnorm/docs/rxnormfiles.html

2-Dec-2013

31

SMQ

Standardised MedDRA Queries (SMQs) http://www.meddramsso.com/secure/smq/SMQ_Spreadsheet_14_0_English_update.xlsx

23-Jan-2013

32

VA Class

RxNorm distribution, http://www.nlm.nih.gov/research/umls/rxnorm/docs/rxnormfiles.html

2-Dec-2013

34

ICD-10-CM

2011 ICD-10-PCS and GEMs, Code Descriptions, http://www.cms.gov/Medicare/Coding/ICD10/2012-ICD-10-CM-and-GEMs.html

21-Nov-2013

35

ICD-10-PCS

2012 ICD-10-PCS and GEMs, Code Descriptions, http://www.cms.gov/Medicare/Coding/ICD10/2012-ICD-10-PCS.html

21-Nov-2013

40

DRG

List of Diagnosis Related Groups (DRGs), FY 2005, http://www.cms.gov/Research-Statistics-Data-and-Systems/Statistics-Trends-and-Reports/MedicareFeeforSvcPartsAB/downloads//DRGDesc05.pdf

30-Jul-2012

MS-DRG

Acute Inpatient - Files for Download , https://www.cms.gov/Medicare/Medicare-Fee-for-Service-Payment/AcuteInpatientPPS/Acute-Inpatient-Files-for-Download.html, Files for FY 20XX Final Rule and Correction Notice, Table 5

18-Feb-2011

41

MDC

MDC Description File, http://www.cms.gov/Medicare/Medicare-Fee-for-Service-Payment/AcuteInpatientPPS/Acute-Inpatient-Files-for-Download-Items/CMS1247844.html

1-Jun-2013

42

APC

Hospital Outpatient PPS, Addendum A and Addendum B Updates, http://www.cms.gov/Medicare/Medicare-Fee-for-Service-Payment/HospitalOutpatientPPS/Addendum-A-and-Addendum-B-Updates.html

28-Sep-2011

46

NLM MeSH

RxNorm distribution, http://www.nlm.nih.gov/research/umls/rxnorm/docs/rxnormfiles.html

2-Dec-2013

47

NUCC

http://www.nucc.org/images/stories/CSV/nucc_taxonomy_131.csv, Version 13.1

7-Jan-2013

48

CMS Specialty

http://www.cms.gov/Medicare/Provider-Enrollment-and-Certification/MedicareProviderSupEnroll/downloads/JSMTDL-08515MedicarProviderTypetoHCPTaxonomy.pdf

 

22-09-2008

50

FDA SPL

RxNorm distribution, http://www.nlm.nih.gov/research/umls/rxnorm/docs/rxnormfiles.html

2-Dec-2013

FDA NDC distribution, http://www.fda.gov/downloads/Drugs/DevelopmentApprovalProcess/UCM070838.zip

26-Nov-2013

 

53

FDB Genseqno

FDB US distribution package

4-Nov-2013

55

OPCS

http://www.isb.nhs.uk/documents/isb-0084/amd-10-2013/0084102013summ.pdf

7-Nov-2013

56

Gemscript

http://www.resip.co.uk/gemscript

12-Dec-2013

57

HES Specialty

 

3-Jan-2014


Comments